Malta Boat Tour Destinations: Blue Lagoon, Gozo & Comino

Malta boat tour destinations await—from the iconic Blue Lagoon‘s turquoise paradise and Comino’s hidden caves, to Gozo’s rugged bays and Valletta’s historic harbors. Dive into crystal-clear waters, snorkel sea grottos, or unwind on sunset sails with trusted local captains. Boat Finder Malta makes it effortless: Compare verified tours, book in seconds with instant confirmation, and enjoy 24h free cancellation. Your ideal sea escape starts here—secure spots before they’re gone!

Top Malta Boat Tour Destinations

Explore Malta’s most stunning boat tour destinations — from crystal-clear lagoons to hidden caves and historic harbors… 

Blue Lagoon: Premier Malta Boat Tour Destination

Anchor in the Blue Lagoon on Comino — famous for electric-blue waters and shallow sandy seabed perfect for snorkeling.

Best for: Swimming, photos, families. Time needed: 2–3 hours.

Comino Caves: Crystal Lagoon & Sea Caves

Dive into the lesser-known Crystal Lagoon and explore Comino’s secret sea caves by speedboat or kayak.

Best for: Scenic views, history, sunset tours. Time needed: 4–6 hours.

Gozo Coast: Dramatic Cliffs & Hidden Bays

Cruise past Gozo’s rugged coastline, including the Fungus Rock and inland sea at Dwejra (former Azure Window site).

Best for: Adventure, snorkeling, small groups. Time needed: 3–4 hours.

All Destinations

How to Choose & Book Your Malta Boat Tour Destinations

Discover Malta’s most breathtaking boat tour destinations and experience the islands from a completely new perspective. From the world-famous Blue Lagoon and the hidden caves of Crystal Lagoon, to the tranquil bays of Comino and the cultural charm of Gozo and Valletta — every stop offers something unique.

Whether you’re looking to relax, snorkel in turquoise waters, or capture Malta’s coastline from your camera, you’ll find the perfect tour to match your mood. Most tours include stops at the Blue Lagoon, but we also feature lesser-known gems like Crystal Lagoon and St. Peter’s Pool.

Planning your trip? Use our filters to sort by duration, group size, or inclusions like snorkel gear and lunch. Explore family-friendly or adventure options — or book a coastal circuit around Gozo’s Ramla Bay with real-time availability

Book with confidence: Instant confirmation, free cancellation up to 24h, and transparent pricing. Your perfect Malta boat day awaits — grab your spot before it sails!

Explore more ways to find your perfect Malta boat tour...

Top Tours

Trending Sea Experiences

Malta Private Charters

Catamaran

Cruise on a wide catamaran by Malta coasts. Lounge, snorkel, see Gozo views. Comfy rides for families, couples. Great for smooth, scenic island explorations.

Explore Tours

Sail Boat

Sail on a classic boat in Malta seas. Glide by cliffs, coves with soft breezes. Enjoy calm sunsets, tours. Ideal for tourists seeking peaceful sea adventures.

Explore Tours

Passengers aboard a tour speedboat departing Valletta at sunset on a Malta harbour cruise

SpeedBoat

Ride a speedboat by Malta coasts. Race to caves, reefs for thrilling waves. Fun tours for tourists craving fast, breathtaking sea adventures in Mediterranean.

Explore Tours

Traditional Boat Tour - Bugibba: Blue Lagoon, Comino and Gozo

Traditional Maltese Boat

Sail a luzzu, Malta iconic boat. Tour harbors, bays with local tales. Calm rides for tourists seeking authentic, cultural sea voyages around the islands.

Explore Tours

Boat Tours & Cruises in Malta

Explore Malta boat tour destinations from the sea with verified local operators—whether you’re chasing the electric turquoise of Blue Lagoon Malta, snorkeling hidden Crystal Lagoon caves, or sailing Gozo’s rugged Gozo boat tours. From family-friendly ferries to private sunset charters, every route departs from Sliema, Bugibba, Valletta, or Cirkewwa with real-time availability.

Boat Finder Malta brings together the island’s top Malta boat tour destinations—including Comino boat tours, Mgarr Harbour Gozo gateway trips, and historic Valletta Harbour Malta cruises. Compare shared day sails, luxury catamarans, or tailor-made private escapes—all with instant confirmation, 24h free cancellation, and no hidden fees. Your perfect coastal adventure is just one click away.

FAQ – Malta Boat Tour Destinations

  • What are the top Malta boat tour destinations? The most popular include Blue Lagoon Malta for swimming, Crystal Lagoon for caves, Gozo boat tours for beaches, and Valletta Harbour Malta for history.
  • Where do boat tours to Malta destinations depart from? Most depart from Sliema, Bugibba, Cirkewwa, or Valletta. Some Mgarr Harbour Gozo trips start directly on Gozo.
  • Are Blue Lagoon and Comino family-friendly destinations? Yes! Shallow waters at Blue Lagoon Malta and Santa Maria Bay Malta are perfect for kids and snorkeling.
  • Can I combine multiple Malta boat tour destinations in one day? Absolutely. Full-day tours often visit Blue Lagoon, Crystal Lagoon, and Gozo in one trip.
  • How do I book a boat to any Malta destination? Use Boat Finder Malta—filter by Malta boat tour destinations, date, and group size. Book in 60 seconds with instant confirmation and free cancellation.
Malta Boat Tour Destinations: Blue Lagoon, Gozo & Comino